Model Condition Perturbation Regulation Figure in paper
model-1.tar.gz
NH4=400 uM,
NO2-=40 uM
aerobic to
anaerobic
Thr & kinetics only Fig. 3E, filled circles
model-2.tar.gz
NH4=400 uM,
NO2-=3000 uM
aerobic to
anaerobic
Thr & kinetics only Fig. 3F, filled circles
model-3.tar.gz
NH4=0 uM,
NO2-=0 uM
aerobic to
anaerobic
control Fig. 3G, open triangles
model-4.tar.gz
NH4=0 uM,
NO2-=3000 uM
aerobic to
anaerobic
Thr, Dyn & kinetics Fig. 3H, open circles
model-5.tar.gz
aerobic,
NH4=400 uM,
NO2-=40 uM
NO2- addition Thr, Shift & kinetics Fig. 4C, open triangles
model-6.tar.gz
aerobic,
NH4=0 uM,
NO2-=0 uM
NO2- addition Thr, Shift & kinetics Fig. 4C, open circles
model-7.tar.gz
anaerobic,
NH4=400 uM,
NO2-=40 uM
NO2- addition Thr, Dyn & kinetics Fig. 4D, open triangles