Model	Condition	Perturbation	Regulation	Figure in paper
model-1.tar.gz	NH4=400 uM, NO2-=40 uM	aerobic to anaerobic	Thr & kinetics only	Fig. 3E, filled circles
model-2.tar.gz	NH4=400 uM, NO2-=3000 uM	aerobic to anaerobic	Thr & kinetics only	Fig. 3F, filled circles
model-3.tar.gz	NH4=0 uM, NO2-=0 uM	aerobic to anaerobic	control	Fig. 3G, open triangles
model-4.tar.gz	NH4=0 uM, NO2-=3000 uM	aerobic to anaerobic	Thr, Dyn & kinetics	Fig. 3H, open circles
model-5.tar.gz	aerobic, NH4=400 uM, NO2-=40 uM	NO2- addition	Thr, Shift & kinetics	Fig. 4C, open triangles
model-6.tar.gz	aerobic, NH4=0 uM, NO2-=0 uM	NO2- addition	Thr, Shift & kinetics	Fig. 4C, open circles
model-7.tar.gz	anaerobic, NH4=400 uM, NO2-=40 uM	NO2- addition	Thr, Dyn & kinetics	Fig. 4D, open triangles