Model | Condition | Perturbation | Regulation | Figure in paper |
---|---|---|---|---|
model-1.tar.gz
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NH4=400 uM, NO2-=40 uM |
aerobic to anaerobic |
Thr & kinetics only | Fig. 3E, filled circles |
model-2.tar.gz
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NH4=400 uM, NO2-=3000 uM |
aerobic to anaerobic |
Thr & kinetics only | Fig. 3F, filled circles |
model-3.tar.gz
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NH4=0 uM, NO2-=0 uM |
aerobic to anaerobic |
control | Fig. 3G, open triangles |
model-4.tar.gz
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NH4=0 uM, NO2-=3000 uM |
aerobic to anaerobic |
Thr, Dyn & kinetics | Fig. 3H, open circles |
model-5.tar.gz
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aerobic, NH4=400 uM, NO2-=40 uM |
NO2- addition | Thr, Shift & kinetics | Fig. 4C, open triangles |
model-6.tar.gz
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aerobic, NH4=0 uM, NO2-=0 uM |
NO2- addition | Thr, Shift & kinetics | Fig. 4C, open circles |
model-7.tar.gz
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anaerobic, NH4=400 uM, NO2-=40 uM |
NO2- addition | Thr, Dyn & kinetics | Fig. 4D, open triangles |